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COLON - Expression summary

RNA expression
HPA:45.3TPM
GTEx:11.3RPKM
FANTOM5:56.7Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

45.3
overview Male, age 54 Sample 1
TPM: 45.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 23.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 30.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 76.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 33.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 58.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 39.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 29.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 38.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 45.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 64.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 35.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 69.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.1
Samples: 149

Max RPKM: 67.5
Min RPKM: 0.6
Std RPKM: 8.8
Median RPKM: 3.0
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 67.5
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 45.6
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 42.7
GTEX-XBED-1726-SM-47JYO 60-69 years, male 37.9
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 26.9
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 23.4
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 20.1
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 20.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 20.1
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 19.5
Show all
Colon - Transverse
RPKM: 15.2
Samples: 196

Max RPKM: 306.6
Min RPKM: 1.0
Std RPKM: 23.4
Median RPKM: 12.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 306.6
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 69.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 67.1
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 63.1
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 61.1
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 39.6
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 33.9
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 32.6
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 32.5
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 31.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.7
FF:10014-101C5 62,83,84 years, mixed 56.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.