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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:7.8TPM
GTEx:5.5RPKM
FANTOM5:28.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA026313

  

Antibody HPA026517

  

Endothelial cells

 Medium   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Low  
   
   

COLON - HPA RNA-seq

Average TPM

7.8
overview Male, age 54 Sample 1
TPM: 9.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 7.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 6.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.1
Samples: 149

Max RPKM: 8.7
Min RPKM: 2.2
Std RPKM: 1.2
Median RPKM: 5.0
GTEX-V955-1726-SM-4JBHF 60-69 years, male 8.7
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 8.2
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 8.2
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 8.0
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 7.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 7.6
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 7.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 7.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 7.0
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 7.0
Show all
Colon - Transverse
RPKM: 5.8
Samples: 196

Max RPKM: 11.1
Min RPKM: 3.0
Std RPKM: 1.3
Median RPKM: 5.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 11.1
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 11.0
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 9.7
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 9.6
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 9.6
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 8.8
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 8.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 8.6
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 8.4
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 8.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

28.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 28.9
FF:10014-101C5 62,83,84 years, mixed 28.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.