Fields »
ABOUT
HELP
BLOG
RCE1

COLON - Expression summary

RNA expression
HPA:9.8TPM
GTEx:13.0RPKM
FANTOM5:14.8Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

9.8
overview Male, age 54 Sample 1
TPM: 8.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 14.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 12.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 9.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.6
Samples: 149

Max RPKM: 17.9
Min RPKM: 4.6
Std RPKM: 2.7
Median RPKM: 9.4
GTEX-V955-1726-SM-4JBHF 60-69 years, male 17.9
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 17.0
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 16.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 16.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 15.8
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 15.5
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 14.7
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 14.6
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 14.5
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 14.2
Show all
Colon - Transverse
RPKM: 15.7
Samples: 196

Max RPKM: 31.4
Min RPKM: 4.9
Std RPKM: 5.3
Median RPKM: 17.1
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 31.4
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 27.5
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 27.3
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 25.0
GTEX-Q734-1126-SM-48TZY 40-49 years, female 24.9
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 24.4
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 23.9
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 23.6
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 23.6
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 23.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.8
FF:10014-101C5 62,83,84 years, mixed 14.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.