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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:22.8TPM
GTEx:8.2RPKM
FANTOM5:74.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA026480

  

Antibody CAB004370

  

Endothelial cells

 Medium   Low  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Medium  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

22.8
overview Male, age 54 Sample 1
TPM: 34.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 23.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 22.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 24.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 20.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 24.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 20.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 26.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 30.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 25.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 17.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.6
Samples: 149

Max RPKM: 15.6
Min RPKM: 4.4
Std RPKM: 1.6
Median RPKM: 7.3
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 15.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 12.2
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 11.7
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 11.3
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 11.0
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 10.8
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 10.7
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 10.7
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 10.6
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 10.4
Show all
Colon - Transverse
RPKM: 8.6
Samples: 196

Max RPKM: 13.2
Min RPKM: 4.4
Std RPKM: 1.8
Median RPKM: 8.3
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 13.2
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 12.8
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 12.8
GTEX-144GM-1226-SM-5LU52 20-29 years, male 12.8
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 12.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 12.5
GTEX-1128S-1626-SM-5H12O 60-69 years, female 12.4
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 12.3
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 12.3
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 12.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

74.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 74.4
FF:10014-101C5 62,83,84 years, mixed 74.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.