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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.4TPM
GTEx:7.0RPKM
FANTOM5:16.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA030302

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

4.4
overview Male, age 54 Sample 1
TPM: 6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.0
Samples: 149

Max RPKM: 13.0
Min RPKM: 4.4
Std RPKM: 1.5
Median RPKM: 7.9
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 13.0
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 11.4
GTEX-145LS-2926-SM-5O99G 60-69 years, female 11.3
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 11.1
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 10.9
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 10.8
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 10.5
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 10.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 10.3
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 10.3
Show all
Colon - Transverse
RPKM: 6.2
Samples: 196

Max RPKM: 10.2
Min RPKM: 2.7
Std RPKM: 1.3
Median RPKM: 6.0
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 10.2
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 10.1
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 9.8
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 9.4
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 9.3
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 9.2
GTEX-S341-1426-SM-4AD6U 40-49 years, female 9.2
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 9.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 8.8
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 8.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

16.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 16.6
FF:10014-101C5 62,83,84 years, mixed 16.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.