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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:57.0TPM
GTEx:108.1RPKM
FANTOM5:116.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody CAB003801

  

Antibody CAB007780

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Medium   Low  

Peripheral nerve/ganglion

 Medium  
      
   
   

COLON - HPA RNA-seq

Average TPM

57.0
overview Male, age 54 Sample 1
TPM: 122.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 56.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 26.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 117.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 76.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 42.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 25
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 30.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 25.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 48.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 88.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 45.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

108.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 115.4
Samples: 149

Max RPKM: 826.7
Min RPKM: 15.2
Std RPKM: 116.8
Median RPKM: 73.5
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 826.7
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 518.8
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 502.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 480.7
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 448.9
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 442.3
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 416.1
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 373.3
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 342.0
GTEX-YF7O-1626-SM-5IFII 50-59 years, male 319.2
Show all
Colon - Transverse
RPKM: 102.6
Samples: 196

Max RPKM: 654.1
Min RPKM: 21.4
Std RPKM: 84.6
Median RPKM: 73.8
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 654.1
GTEX-XQ8I-2126-SM-4BOOM 50-59 years, male 500.4
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 460.2
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 423.7
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 314.5
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 304.0
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 296.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 281.2
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 267.2
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 263.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

116.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 116.2
FF:10014-101C5 62,83,84 years, mixed 116.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.