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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:360.6TPM
GTEx:162.5RPKM
FANTOM5:681.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA002242

  

Antibody CAB001513

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 Not detected   Medium  

Peripheral nerve/ganglion

 Not detected  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

360.6
overview Male, age 54 Sample 1
TPM: 409.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 279.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 319.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 371.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 360.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 425.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 456.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 266.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 368.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 389.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 508.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 318.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 213.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

162.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 120.9
Samples: 149

Max RPKM: 585.1
Min RPKM: 59.6
Std RPKM: 54.0
Median RPKM: 112.1
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 585.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 282.6
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 277.9
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 240.1
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 235.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 223.1
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 208.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 200.5
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 193.5
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 185.2
Show all
Colon - Transverse
RPKM: 194.1
Samples: 196

Max RPKM: 721.8
Min RPKM: 49.4
Std RPKM: 102.3
Median RPKM: 169.6
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 721.8
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 538.5
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 522.3
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 499.5
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 499.0
GTEX-131XE-0826-SM-5HL9W 50-59 years, male 476.8
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 469.9
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 447.0
GTEX-144GN-1126-SM-5LU33 50-59 years, male 446.7
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 431.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

681.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 681.7
FF:10014-101C5 62,83,84 years, mixed 681.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.