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SYNM

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:62.8TPM
GTEx:206.2RPKM
FANTOM5:146.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA040066

  

Antibody HPA044200

  

Antibody CAB017192

  

Endothelial cells

 Medium   Not detected   Low  

Glandular cells

 Not detected   Not detected   Medium  

Peripheral nerve/ganglion

 High   High   High  
     
     

COLON - HPA RNA-seq

Average TPM

62.8
overview Male, age 54 Sample 1
TPM: 42.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 22.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 353.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 167
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 45
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 76
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 53.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

206.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 318.0
Samples: 149

Max RPKM: 530.0
Min RPKM: 94.5
Std RPKM: 93.8
Median RPKM: 319.4
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 530.0
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 522.2
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 516.4
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 511.7
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 504.5
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 498.7
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 496.1
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 492.2
GTEX-13111-1926-SM-5GCOL 50-59 years, male 482.2
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 481.9
Show all
Colon - Transverse
RPKM: 121.2
Samples: 196

Max RPKM: 483.5
Min RPKM: 1.6
Std RPKM: 128.3
Median RPKM: 67.9
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 483.5
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 447.8
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 418.2
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 415.4
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 405.6
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 396.8
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 393.3
GTEX-11GSP-1626-SM-5986N 60-69 years, female 392.6
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 382.7
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 379.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

146.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 146.5
FF:10014-101C5 62,83,84 years, mixed 146.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.