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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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AP3M1
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PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

GENERAL INFORMATION

Gene name

AP3M1

Gene description

Adaptor-related protein complex 3, mu 1 subunit

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

2
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Expressed in all
HPA (cell line):Expressed in all
HPA (normal tissue):Expressed in all

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Cytoplasmic expression in several different tissue types.

ANTIBODY IHC RELIABILITY

Data reliability
description

Caution, targets protein from more than one gene. Pending external verification.

Reliability score

Uncertain based on 2 antibodies.
HPA045591 , HPA048380
SHOW MORE

PROGNOSTIC SUMMARY

Gene product is not prognostic.
Show all

RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Expressed in all

PROTEIN EXPRESSION

Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer

STAINING SUMMARY

HPA045591
HPA048380

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Several cases of colorectal, prostate, ovarian, cervical, testis, urothelial and pancreatic cancers displayed moderate cytoplasmic and membranous staining. Remaining malignant tissues were weakly stained or negative.

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Several cases of malignant melanomas showed moderate cytoplasmic immunoreactivity. Remaining malignant tissues were generally negative.

GENE INFORMATION

Gene name

AP3M1

Synonyms

Description

Adaptor-related protein complex 3, mu 1 subunit (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene is the medium subunit of AP-3, which is an adaptor-related protein complex associated with the Golgi region as well as more peripheral intracellular structures. AP-3 facilitates the budding of vesicles from the Golgi membrane and may be directly involved in protein sorting to the endosomal/lysosomal system. AP-3 is a heterotetrameric protein complex composed of two large subunits (delta and beta3), a medium subunit (mu3), and a small subunit (sigma 3). Mutations in one of the large subunits of AP-3 have been associated with the Hermansky-Pudlak syndrome, a genetic disorder characterized by defective lysosome-related organelles. Alternatively spliced transcript variants encoding the same protein have been observed. [provided by RefSeq, Jul 2008]

Chromosome

10

Cytoband

q22.2

Chromosome location (bp)

74120255 - 74151063

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000185009 (version 83.38)

Entrez gene

26985

UniProt

Q9Y2T2 (UniProt - Evidence at protein level)

neXtProt

NX_Q9Y2T2

Antibodypedia

AP3M1 antibodies

PROTEIN BROWSER

AP3M1-001
AP3M1-002

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

AP3M1-001
ENSP00000347408
ENST00000355264
Q9Y2T2 [Direct mapping]
AP-3 complex subunit mu-1
A0A024QZR5 [Target identity:100%; Query identity:100%]
Adaptor-related protein complex 3, mu 1 subunit, isoform CRA_a
Show all
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005794 [Golgi apparatus]
GO:0006622 [protein targeting to lysosome]
GO:0006810 [transport]
GO:0006886 [intracellular protein transport]
GO:0008089 [anterograde axon cargo transport]
GO:0016192 [vesicle-mediated transport]
GO:0017137 [Rab GTPase binding]
GO:0030131 [clathrin adaptor complex]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0048490 [anterograde synaptic vesicle transport]
Show all
418 aa
46.9 kDa
No 0
AP3M1-002
ENSP00000361831
ENST00000372745
Q9Y2T2 [Direct mapping]
AP-3 complex subunit mu-1
A0A024QZR5 [Target identity:100%; Query identity:100%]
Adaptor-related protein complex 3, mu 1 subunit, isoform CRA_a
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005794 [Golgi apparatus]
GO:0006622 [protein targeting to lysosome]
GO:0006810 [transport]
GO:0006886 [intracellular protein transport]
GO:0008089 [anterograde axon cargo transport]
GO:0016192 [vesicle-mediated transport]
GO:0017137 [Rab GTPase binding]
GO:0030131 [clathrin adaptor complex]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0048490 [anterograde synaptic vesicle transport]
Show all
418 aa
46.9 kDa
No 0

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