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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:9.5TPM
GTEx:7.8RPKM
FANTOM5:30.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA039858

  

Antibody CAB009960

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium   Medium  
   
   

COLON - HPA RNA-seq

Average TPM

9.5
overview Male, age 54 Sample 1
TPM: 15.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 16.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.4
Samples: 149

Max RPKM: 11.0
Min RPKM: 3.9
Std RPKM: 1.1
Median RPKM: 7.5
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 11.0
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 10.3
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 10.2
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 10.2
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 9.7
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 9.3
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 9.2
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 9.2
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 9.1
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 9.0
Show all
Colon - Transverse
RPKM: 8.1
Samples: 196

Max RPKM: 11.7
Min RPKM: 4.6
Std RPKM: 1.2
Median RPKM: 8.1
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 11.7
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 10.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 10.7
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 10.7
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 10.6
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 10.6
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 10.3
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 10.3
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 10.2
GTEX-13QBU-1826-SM-5IJG3 40-49 years, female 10.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

30.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 30.1
FF:10014-101C5 62,83,84 years, mixed 30.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.