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PBX1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:26.7TPM
GTEx:15.5RPKM
FANTOM5:146.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA003505

  

Antibody HPA003881

  

Antibody CAB018768

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Not detected   Not detected   Low  

Peripheral nerve/ganglion

 Low   Low   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

26.7
overview Male, age 54 Sample 1
TPM: 25.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 25.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 26.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 43.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 21.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 35.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 22.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 33.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 18
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 25.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 34.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 21.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

15.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 21.5
Samples: 149

Max RPKM: 42.3
Min RPKM: 4.2
Std RPKM: 7.6
Median RPKM: 19.6
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 42.3
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 39.8
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 37.6
GTEX-ZYFG-1826-SM-5GZWX 60-69 years, female 36.8
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 36.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 36.4
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 35.8
GTEX-13111-1926-SM-5GCOL 50-59 years, male 35.5
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 35.0
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 35.0
Show all
Colon - Transverse
RPKM: 10.9
Samples: 196

Max RPKM: 32.0
Min RPKM: 2.1
Std RPKM: 7.6
Median RPKM: 7.9
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 32.0
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 31.3
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 30.7
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 30.5
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 30.4
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 30.0
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 29.7
GTEX-Y114-1526-SM-4TT79 50-59 years, female 29.3
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 28.5
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 28.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

146.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 146.6
FF:10014-101C5 62,83,84 years, mixed 146.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.