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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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IFIT1
  • TISSUE

  • premium

    CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

IFIT1

Gene description

Interferon-induced protein with tetratricopeptide repeats 1

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

2
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in most tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data. Pending external verification.

Reliability score

Approved based on 2 antibodies.
HPA055380 , CAB045980
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

IFIT1 (HGNC Symbol)

Synonyms

G10P1, GARG-16, IFI56, IFNAI1

Description

Interferon-induced protein with tetratricopeptide repeats 1 (HGNC Symbol)

Entrez gene summary

This gene encodes a protein containing tetratricopeptide repeats that was originally identified as induced upon treatment with interferon. The encoded protein may inhibit viral replication and translational initiation. This gene is located in a cluster on chromosome 10 with five other closely related genes. There is a pseudogene for this gene on chromosome 13. Alternatively spliced transcript variants encoding multiple isoforms have been observed. [provided by RefSeq, Aug 2012]

Chromosome

10

Cytoband

q23.31

Chromosome location (bp)

89392546 - 89406486

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000185745 (version 83.38)

Entrez gene

3434

UniProt

P09914 (UniProt - Evidence at protein level)

neXtProt

NX_P09914

Antibodypedia

IFIT1 antibodies

PROTEIN BROWSER

IFIT1-001
IFIT1-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

IFIT1-001
ENSP00000360869
ENST00000371804
P09914 [Direct mapping]
Interferon-induced protein with tetratricopeptide repeats 1
Show all
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0009615 [response to virus]
GO:0019060 [intracellular transport of viral protein in host cell]
GO:0019221 [cytokine-mediated signaling pathway]
GO:0032091 [negative regulation of protein binding]
GO:0043657 [host cell]
GO:0045070 [positive regulation of viral genome replication]
GO:0045071 [negative regulation of viral genome replication]
GO:0050689 [negative regulation of defense response to virus by host]
GO:0051097 [negative regulation of helicase activity]
GO:0051607 [defense response to virus]
GO:0060337 [type I interferon signaling pathway]
GO:0071357 [cellular response to type I interferon]
GO:0071360 [cellular response to exogenous dsRNA]
Show all
478 aa
55.4 kDa
No 0
IFIT1-201
ENSP00000441968
ENST00000546318
P09914 [Direct mapping]
Interferon-induced protein with tetratricopeptide repeats 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0009615 [response to virus]
GO:0019060 [intracellular transport of viral protein in host cell]
GO:0019221 [cytokine-mediated signaling pathway]
GO:0032091 [negative regulation of protein binding]
GO:0043657 [host cell]
GO:0045070 [positive regulation of viral genome replication]
GO:0045071 [negative regulation of viral genome replication]
GO:0050689 [negative regulation of defense response to virus by host]
GO:0051097 [negative regulation of helicase activity]
GO:0051607 [defense response to virus]
GO:0060337 [type I interferon signaling pathway]
GO:0071357 [cellular response to type I interferon]
GO:0071360 [cellular response to exogenous dsRNA]
Show all
447 aa
51.7 kDa
No 0

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