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Term
Gene name

Class

Subclass

Chromosome

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In atlas

Reliability

Reliability

Reliability

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Method

Validation

Method

Validation

Method

Validation

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Searches

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Specificity

Cell line

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Cancer

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Detectable

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Detectable

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NBPF6
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

NBPF6

Gene description

Neuroblastoma breakpoint family, member 6

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

5
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enriched (testis)
GTEx:Tissue enhanced (testis)

Protein evidence

Evidence at transcript level

Protein expression

RNA-based expert annotation gave inconclusive results.

DATA RELIABILITY

Data reliability
description

Pending external verification. Caution, targets protein from more than one gene. Presumed off target binding observed and disregarded.

Reliability score

Uncertain based on 4 antibodies.
HPA045044 , HPA046411 , HPA047447 , HPA058050
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (testis)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (testis)

GENE INFORMATION

Gene name

NBPF6

Synonyms

Description

Neuroblastoma breakpoint family, member 6 (HGNC Symbol)

Entrez gene summary

This gene is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the human lineage and has expanded, to a lesser extent, among primates in general. Members of this gene family are characterized by tandemly repeated copies of DUF1220 protein domains. Gene copy number variations in the human chromosomal region 1q21.1, where most DUF1220 domains are located, have been implicated in a number of developmental and neurogenetic diseases such as microcephaly, macrocephaly, autism, schizophrenia, mental retardation, congenital heart disease, neuroblastoma, and congenital kidney and urinary tract anomalies. Altered expression of some gene family members is associated with several types of cancer. This gene family contains numerous pseudogenes. Alternative splicing of this gene results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Mar 2013]

Chromosome

1

Cytoband

p13.3

Chromosome location (bp)

108375799 - 108471002

Protein evidence

Evidence at transcript level (all genes)

Ensembl

ENSG00000186086 (version 83.38)

Entrez gene

653149

UniProt

Q5VWK0 (UniProt - Evidence at transcript level)

neXtProt

NX_Q5VWK0

Antibodypedia

NBPF6 antibodies

PROTEIN BROWSER

NBPF6-002
NBPF6-003
NBPF6-201
NBPF6-202
NBPF6-203

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

NBPF6-002
ENSP00000417277
ENST00000495380
Q5VWK0 [Direct mapping]
Neuroblastoma breakpoint family member 6
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
Show all
638 aa
72.2 kDa
No 0
NBPF6-003
ENSP00000434735
ENST00000531446
A0A0B4J227 [Direct mapping]
Neuroblastoma breakpoint family member 6
Show all
Predicted intracellular proteins
Show all
573 aa
64.8 kDa
No 0
NBPF6-201
ENSP00000294652
ENST00000294652
Q5VWK0 [Direct mapping]
Neuroblastoma breakpoint family member 6
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
Show all
638 aa
72.2 kDa
No 0
NBPF6-202
ENSP00000359057
ENST00000370040
Q5VWK0 [Direct mapping]
Neuroblastoma breakpoint family member 6
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
Show all
667 aa
75.4 kDa
No 0
NBPF6-203
ENSP00000402703
ENST00000444143
Q5VWK0 [Direct mapping]
Neuroblastoma breakpoint family member 6
Show all
Predicted intracellular proteins
Show all
GO:0005737 [cytoplasm]
Show all
638 aa
72.2 kDa
No 0

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