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COLON - Expression summary

RNA expression
HPA:30.3TPM
GTEx:17.6RPKM
FANTOM5:37.3Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

30.3
overview Male, age 54 Sample 1
TPM: 85.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 20.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 20.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 35.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 37.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 27.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 25.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 60.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 13.2
Samples: 149

Max RPKM: 113.8
Min RPKM: 5.1
Std RPKM: 11.5
Median RPKM: 10.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 113.8
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 64.6
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 49.3
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 45.8
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 44.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 43.2
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 24.2
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 23.8
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 23.0
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 22.4
Show all
Colon - Transverse
RPKM: 20.9
Samples: 196

Max RPKM: 233.2
Min RPKM: 5.0
Std RPKM: 22.6
Median RPKM: 14.5
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 233.2
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 108.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 92.8
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 88.4
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 86.7
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 75.8
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 75.0
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 71.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 67.4
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 62.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

37.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 37.3
FF:10014-101C5 62,83,84 years, mixed 37.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.