Fields »
ABOUT
HELP
BLOG
INCA1

COLON - Expression summary

RNA expression
HPA:8.5TPM
GTEx:2.4RPKM
FANTOM5:1.0Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA044359

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

8.5
overview Male, age 54 Sample 1
TPM: 7.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 6.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 8.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 14.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.3
Samples: 149

Max RPKM: 4.3
Min RPKM: 0.7
Std RPKM: 0.6
Median RPKM: 2.2
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 4.3
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 4.0
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 4.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 3.5
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 3.5
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 3.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 3.3
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 3.3
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 3.3
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 3.3
Show all
Colon - Transverse
RPKM: 2.5
Samples: 196

Max RPKM: 4.6
Min RPKM: 0.8
Std RPKM: 0.6
Median RPKM: 2.5
GTEX-U3ZM-1126-SM-4DXUB 40-49 years, male 4.6
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 4.2
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 4.0
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 3.9
GTEX-11LCK-2026-SM-5A5MA 30-39 years, male 3.8
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 3.8
GTEX-13111-0726-SM-5DUVE 50-59 years, male 3.8
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 3.8
GTEX-S7SF-1926-SM-4AT5B 20-29 years, female 3.8
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 3.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1.0
FF:10014-101C5 62,83,84 years, mixed 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.