Fields »
ABOUT
HELP
BLOG
PDLIM7

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:48.8TPM
GTEx:170.9RPKM
FANTOM5:206.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA018794

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

48.8
overview Male, age 54 Sample 1
TPM: 44.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 26.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 31.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 27.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 200.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 91.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 34.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 70.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 59.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

170.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 267.7
Samples: 149

Max RPKM: 575.8
Min RPKM: 38.8
Std RPKM: 95.9
Median RPKM: 253.5
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 575.8
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 489.5
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 487.8
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 481.9
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 472.0
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 443.6
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 440.7
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 440.6
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 440.1
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 432.2
Show all
Colon - Transverse
RPKM: 97.3
Samples: 196

Max RPKM: 501.6
Min RPKM: 2.8
Std RPKM: 96.0
Median RPKM: 66.7
GTEX-11GSP-1626-SM-5986N 60-69 years, female 501.6
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 423.0
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 352.2
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 334.8
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 326.1
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 298.4
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 294.7
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 286.0
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 272.5
GTEX-SNMC-1126-SM-4DM5M 20-29 years, male 271.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

206.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 206.1
FF:10014-101C5 62,83,84 years, mixed 206.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.