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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:33.2TPM
GTEx:107.9RPKM
FANTOM5:292.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA020095

  

Antibody HPA020138

  

Antibody CAB010878

  

Endothelial cells

 Medium   Low   Medium  

Glandular cells

 Medium   Medium   Medium  

Peripheral nerve/ganglion

 Low   Not detected   Medium  
     
     

COLON - HPA RNA-seq

Average TPM

33.2
overview Male, age 54 Sample 1
TPM: 42.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 26
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 82.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 17.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 67
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 17.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 28
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 58.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 33.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

107.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 160.7
Samples: 149

Max RPKM: 296.8
Min RPKM: 28.3
Std RPKM: 59.8
Median RPKM: 152.1
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 296.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 281.3
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 276.2
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 274.9
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 269.5
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 263.4
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 262.9
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 262.8
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 261.7
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 260.3
Show all
Colon - Transverse
RPKM: 67.7
Samples: 196

Max RPKM: 284.5
Min RPKM: 3.6
Std RPKM: 70.6
Median RPKM: 39.5
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 284.5
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 283.3
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 278.0
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 264.8
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 260.3
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 239.4
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 236.2
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 228.1
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 224.1
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 223.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

292.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 292.7
FF:10014-101C5 62,83,84 years, mixed 292.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.