Fields »
ABOUT
HELP
BLOG
PDGFA

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.0TPM
GTEx:15.3RPKM
FANTOM5:54.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody CAB005579

  

Endothelial cells

 High  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

17.0
overview Male, age 54 Sample 1
TPM: 26.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 16.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 13.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 33.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 16.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

15.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 17.6
Samples: 149

Max RPKM: 35.9
Min RPKM: 8.0
Std RPKM: 6.0
Median RPKM: 15.9
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 35.9
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 34.1
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 33.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 32.8
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 31.5
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 30.9
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 29.6
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 29.5
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 28.9
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 28.6
Show all
Colon - Transverse
RPKM: 13.7
Samples: 196

Max RPKM: 30.5
Min RPKM: 5.7
Std RPKM: 4.4
Median RPKM: 12.8
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 30.5
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 29.2
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 28.9
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 28.6
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 28.2
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 27.1
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 26.5
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 25.2
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 24.5
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 22.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

54.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 54.5
FF:10014-101C5 62,83,84 years, mixed 54.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.