Fields »
ABOUT
HELP
BLOG
BCO2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:0.6TPM
GTEx:1.2RPKM
FANTOM5:1.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA039825

  

Antibody HPA040695

  

Endothelial cells

 Low   Medium  

Glandular cells

 High   Low  

Peripheral nerve/ganglion

 Medium   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

0.6
overview Male, age 54 Sample 1
TPM: 0.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 0.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.6
Samples: 149

Max RPKM: 4.7
Min RPKM: 0.3
Std RPKM: 0.9
Median RPKM: 1.3
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 4.7
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 4.5
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 4.1
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 4.1
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 4.0
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 3.8
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 3.5
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 3.4
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 3.4
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 3.4
Show all
Colon - Transverse
RPKM: 0.9
Samples: 196

Max RPKM: 2.7
Min RPKM: 0.2
Std RPKM: 0.4
Median RPKM: 0.8
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 2.7
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 2.6
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 2.4
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 2.4
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 2.3
GTEX-11GSP-1626-SM-5986N 60-69 years, female 2.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 2.2
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 2.0
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 2.0
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 1.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1.9
FF:10014-101C5 62,83,84 years, mixed 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.