Fields »
ABOUT
HELP
BLOG
SPTAN1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:39.2TPM
GTEx:27.9RPKM
FANTOM5:132.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
 

Antibody staining

Antibody HPA007927

  

Antibody CAB004581

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

39.2
overview Male, age 54 Sample 1
TPM: 40.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 32.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 33.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 42.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 24.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 47.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 41
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 37.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 47.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 32.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 50.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 45.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 32.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

27.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 30.4
Samples: 149

Max RPKM: 47.1
Min RPKM: 15.6
Std RPKM: 5.4
Median RPKM: 30.6
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 47.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 42.6
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 41.9
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 40.9
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 40.4
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 39.9
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 39.8
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 39.8
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 39.4
GTEX-12KS4-2326-SM-5EGJB 30-39 years, male 39.0
Show all
Colon - Transverse
RPKM: 26.0
Samples: 196

Max RPKM: 46.7
Min RPKM: 12.2
Std RPKM: 6.3
Median RPKM: 25.2
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 46.7
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 41.5
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 40.9
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 39.9
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 39.6
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 39.1
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 38.9
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 38.7
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 38.3
GTEX-11GSP-1626-SM-5986N 60-69 years, female 38.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

132.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 132.6
FF:10014-101C5 62,83,84 years, mixed 132.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.