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PAPSS2

COLON - Expression summary

RNA expression
HPA:77.9TPM
GTEx:20.2RPKM
FANTOM5:16.5Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

77.9
overview Male, age 54 Sample 1
TPM: 57.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 46.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 62.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 124.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 29.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 58.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 125.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 84.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 59.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 115
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 78.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 98.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 72.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

20.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.1
Samples: 149

Max RPKM: 12.9
Min RPKM: 1.0
Std RPKM: 1.9
Median RPKM: 3.6
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 12.9
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 11.0
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 10.1
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 9.4
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 8.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 8.4
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 8.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 8.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 7.8
GTEX-XBED-1726-SM-47JYO 60-69 years, male 7.8
Show all
Colon - Transverse
RPKM: 32.4
Samples: 196

Max RPKM: 117.9
Min RPKM: 1.7
Std RPKM: 22.9
Median RPKM: 34.2
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 117.9
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 91.1
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 87.0
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 79.8
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 74.3
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 73.4
GTEX-144GM-1226-SM-5LU52 20-29 years, male 73.2
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 72.7
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 71.9
GTEX-139YR-2126-SM-5KM11 50-59 years, male 70.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

16.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 16.5
FF:10014-101C5 62,83,84 years, mixed 16.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.