Fields »
ABOUT
HELP
BLOG
LRIG2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.1TPM
GTEx:2.5RPKM
FANTOM5:25.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA015538

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

2.1
overview Male, age 54 Sample 1
TPM: 2.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.2
Samples: 149

Max RPKM: 5.6
Min RPKM: 0.9
Std RPKM: 0.5
Median RPKM: 2.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 5.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 3.7
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 3.6
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 3.4
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 3.3
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 3.2
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 3.2
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 3.1
GTEX-12696-1926-SM-5EGJT 60-69 years, male 3.0
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 3.0
Show all
Colon - Transverse
RPKM: 2.7
Samples: 196

Max RPKM: 4.3
Min RPKM: 1.2
Std RPKM: 0.6
Median RPKM: 2.7
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 4.3
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 4.2
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 4.1
GTEX-13111-0726-SM-5DUVE 50-59 years, male 4.1
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 4.1
GTEX-1211K-1726-SM-5FQUJ 60-69 years, female 4.0
GTEX-13QBU-1826-SM-5IJG3 40-49 years, female 4.0
GTEX-13PL7-2526-SM-5IFGR 60-69 years, female 3.9
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 3.9
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 3.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

25.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 25.3
FF:10014-101C5 62,83,84 years, mixed 25.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.