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SARNP

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:45.8TPM
GTEx:7.3RPKM
FANTOM5:34.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA030902

  

Antibody HPA030903

  

Endothelial cells

 High   High  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   High  
   
   

COLON - HPA RNA-seq

Average TPM

45.8
overview Male, age 54 Sample 1
TPM: 42.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 35.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 47.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 43.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 39.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 54.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 57.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 36.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 52.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 60.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 46.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 45.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 33.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.7
Samples: 149

Max RPKM: 17.2
Min RPKM: 4.5
Std RPKM: 2.4
Median RPKM: 9.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 17.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 16.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 16.0
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 15.3
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 14.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 14.4
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 14.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 14.1
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 13.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 13.8
Show all
Colon - Transverse
RPKM: 5.5
Samples: 196

Max RPKM: 18.2
Min RPKM: 1.6
Std RPKM: 2.8
Median RPKM: 4.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 18.2
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 14.1
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 13.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 13.5
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 12.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 12.2
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 12.1
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 11.7
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 11.6
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 11.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

34.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 34.0
FF:10014-101C5 62,83,84 years, mixed 34.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.