Fields »
ABOUT
HELP
BLOG
IPO7

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.8TPM
GTEx:21.3RPKM
FANTOM5:141.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA019002

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

30.8
overview Male, age 54 Sample 1
TPM: 30.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 29
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 25.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 30.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 37.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 31.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 30
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 34.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 33.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 37.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 23.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 25.0
Samples: 149

Max RPKM: 42.2
Min RPKM: 11.8
Std RPKM: 6.2
Median RPKM: 24.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 42.2
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 41.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 40.4
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 38.3
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 38.1
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 37.8
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 37.5
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 35.8
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 35.7
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 35.2
Show all
Colon - Transverse
RPKM: 18.5
Samples: 196

Max RPKM: 52.4
Min RPKM: 5.7
Std RPKM: 8.0
Median RPKM: 16.5
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 52.4
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 51.6
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 50.3
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 43.0
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 40.8
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 36.9
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 36.6
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 36.5
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 36.4
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 33.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

141.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 141.0
FF:10014-101C5 62,83,84 years, mixed 141.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.