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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4250.8TPM
GTEx:506.9RPKM
FANTOM5:19.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
 

Antibody staining

Antibody CAB033806

  

Endothelial cells

 Medium  

Glandular cells

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

4250.8
overview Male, age 54 Sample 1
TPM: 3969.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4717.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 5121.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5451
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5097.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3542
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4874.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3845.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3902.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4032.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3560.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3546.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3598.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

506.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 321.4
Samples: 149

Max RPKM: 974.7
Min RPKM: 108.7
Std RPKM: 151.9
Median RPKM: 283.5
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 974.7
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 861.2
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 727.3
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 704.5
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 691.2
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 652.2
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 636.6
GTEX-145LS-2926-SM-5O99G 60-69 years, female 597.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 580.8
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 580.7
Show all
Colon - Transverse
RPKM: 647.9
Samples: 196

Max RPKM: 1402.0
Min RPKM: 132.9
Std RPKM: 265.7
Median RPKM: 672.9
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 1402.0
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 1328.0
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 1252.6
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 1170.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 1134.5
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 1131.6
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 1105.7
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 1095.8
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 1069.8
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 1064.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

19.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 19.8
FF:10014-101C5 62,83,84 years, mixed 19.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.