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COLON - Expression summary

RNA expression
HPA:6.2TPM
GTEx:14.8RPKM
FANTOM5:0.5Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

6.2
overview Male, age 54 Sample 1
TPM: 5.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 6.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 7.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 12.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.5
Samples: 149

Max RPKM: 53.2
Min RPKM: 6.5
Std RPKM: 10.6
Median RPKM: 17.9
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 53.2
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 51.0
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 47.6
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 47.5
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 46.3
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 45.6
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 44.1
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 43.8
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 43.2
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 43.0
Show all
Colon - Transverse
RPKM: 10.5
Samples: 196

Max RPKM: 37.9
Min RPKM: 2.2
Std RPKM: 7.5
Median RPKM: 7.5
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 37.9
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 37.6
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 37.1
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 35.1
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 34.1
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 30.1
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 28.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 28.7
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 28.5
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 27.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

0.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 0.5
FF:10014-101C5 62,83,84 years, mixed 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.