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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:5.7TPM
GTEx:16.3RPKM
FANTOM5:8.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA011157

  

Antibody CAB002223

  

Antibody CAB012978

  

Endothelial cells

 Low   Not detected   Not detected  

Glandular cells

 Low   Not detected   High  

Peripheral nerve/ganglion

 Not detected  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

5.7
overview Male, age 54 Sample 1
TPM: 3.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 21.6
Samples: 149

Max RPKM: 79.2
Min RPKM: 5.0
Std RPKM: 11.7
Median RPKM: 18.4
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 79.2
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 67.2
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 48.4
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 46.6
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 44.4
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 43.1
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 42.1
GTEX-145LS-2926-SM-5O99G 60-69 years, female 41.7
GTEX-1212Z-1826-SM-5FQSH 60-69 years, male 41.4
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 40.0
Show all
Colon - Transverse
RPKM: 12.4
Samples: 196

Max RPKM: 40.9
Min RPKM: 3.2
Std RPKM: 7.1
Median RPKM: 10.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 40.9
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 38.4
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 36.9
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 36.5
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 31.9
GTEX-11GSP-1626-SM-5986N 60-69 years, female 31.2
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 30.1
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 26.9
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 26.9
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 26.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

8.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 8.6
FF:10014-101C5 62,83,84 years, mixed 8.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.