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REPIN1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:40.4TPM
GTEx:38.1RPKM
FANTOM5:61.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA036022

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

40.4
overview Male, age 54 Sample 1
TPM: 67.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 49
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 50.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 53.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 24.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 31.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 31.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 38.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 26.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 43.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 37.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 44.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

38.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 28.6
Samples: 149

Max RPKM: 48.2
Min RPKM: 17.7
Std RPKM: 5.6
Median RPKM: 27.6
GTEX-V955-1726-SM-4JBHF 60-69 years, male 48.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 43.4
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 42.0
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 41.3
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 40.4
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 40.3
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 39.1
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 38.9
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 38.8
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 38.7
Show all
Colon - Transverse
RPKM: 45.2
Samples: 196

Max RPKM: 87.4
Min RPKM: 10.0
Std RPKM: 16.6
Median RPKM: 48.2
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 87.4
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 83.9
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 80.2
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 79.9
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 78.6
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 75.7
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 74.3
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 74.3
GTEX-S4P3-1226-SM-4AD4Y 50-59 years, female 74.1
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 72.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

61.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 61.4
FF:10014-101C5 62,83,84 years, mixed 61.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.