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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.7TPM
GTEx:1.3RPKM
FANTOM5:18.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA036316

  

Antibody HPA036317

  

Endothelial cells

 Low   Not detected  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Low  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

6.7
overview Male, age 54 Sample 1
TPM: 7.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 5.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 7.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.1
Samples: 149

Max RPKM: 2.2
Min RPKM: 0.4
Std RPKM: 0.3
Median RPKM: 1.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 2.2
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 2.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 2.1
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 2.0
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 2.0
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 1.8
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 1.8
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 1.7
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 1.6
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 1.6
Show all
Colon - Transverse
RPKM: 1.5
Samples: 196

Max RPKM: 3.0
Min RPKM: 0.3
Std RPKM: 0.5
Median RPKM: 1.5
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 3.0
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 2.8
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 2.8
GTEX-X15G-1326-SM-4PQZJ 50-59 years, female 2.8
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 2.6
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 2.6
GTEX-S4P3-1226-SM-4AD4Y 50-59 years, female 2.6
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 2.5
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 2.5
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 2.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

18.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 18.5
FF:10014-101C5 62,83,84 years, mixed 18.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.