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Gene name

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Chromosome

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In atlas

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Reliability

Reliability

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Method

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Method

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Cell line

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Cancer

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Detectable

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Detectable

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TAPBP
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

TAPBP

Gene description

TAP binding protein (tapasin)

Protein class

Plasma proteins
Predicted membrane proteins
Predicted secreted proteins

Predicted localization

Membrane,Secreted

Number of transcripts

6
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General cytoplasmic expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA007066
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
N/A
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

TAPBP (HGNC Symbol)

Synonyms

TAPA

Description

TAP binding protein (tapasin) (HGNC Symbol)

Entrez gene summary

This gene encodes a transmembrane glycoprotein which mediates interaction between newly assembled major histocompatibility complex (MHC) class I molecules and the transporter associated with antigen processing (TAP), which is required for the transport of antigenic peptides across the endoplasmic reticulum membrane. This interaction is essential for optimal peptide loading on the MHC class I molecule. Up to four complexes of MHC class I and this protein may be bound to a single TAP molecule. This protein contains a C-terminal double-lysine motif (KKKAE) known to maintain membrane proteins in the endoplasmic reticulum. This gene lies within the major histocompatibility complex on chromosome 6. Alternative splicing results in three transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

Chromosome

6

Cytoband

p21.32

Chromosome location (bp)

33299694 - 33314387

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000231925 (version 83.38)

Entrez gene

6892

UniProt

O15533 (UniProt - Evidence at protein level)

neXtProt

NX_O15533

Antibodypedia

TAPBP antibodies

PROTEIN BROWSER

TAPBP-001
TAPBP-006
TAPBP-007
TAPBP-008
TAPBP-010
TAPBP-206

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

TAPBP-001
ENSP00000395701
ENST00000434618
O15533 [Direct mapping]
Tapasin
A0A024RCT1 [Target identity:100%; Query identity:100%]
TAP binding protein (Tapasin), isoform CRA_c
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0002474 [antigen processing and presentation of peptide antigen via MHC class I]
GO:0002479 [antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006461 [protein complex assembly]
GO:0006890 [retrograde vesicle-mediated transport, Golgi to ER]
GO:0006955 [immune response]
GO:0015433 [peptide antigen-transporting ATPase activity]
GO:0015833 [peptide transport]
GO:0016021 [integral component of membrane]
GO:0019885 [antigen processing and presentation of endogenous peptide antigen via MHC class I]
GO:0042288 [MHC class I protein binding]
GO:0042590 [antigen processing and presentation of exogenous peptide antigen via MHC class I]
GO:0042605 [peptide antigen binding]
GO:0042824 [MHC class I peptide loading complex]
GO:0042825 [TAP complex]
GO:0042886 [amide transport]
GO:0046978 [TAP1 binding]
GO:0046979 [TAP2 binding]
GO:0050823 [peptide antigen stabilization]
GO:0051082 [unfolded protein binding]
GO:0071556 [integral component of lumenal side of endoplasmic reticulum membrane]
Show all
448 aa
47.6 kDa
Yes 1
TAPBP-006
ENSP00000419659
ENST00000489157
A0A0A0MT98 [Direct mapping]
Tapasin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0016021 [integral component of membrane]
Show all
361 aa
38.3 kDa
Yes 1
TAPBP-007
ENSP00000417949
ENST00000475304
A2AB90 [Direct mapping]
Tapasin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0016021 [integral component of membrane]
GO:0019885 [antigen processing and presentation of endogenous peptide antigen via MHC class I]
Show all
466 aa
49.5 kDa
Yes 1
TAPBP-008
ENSP00000404833
ENST00000426633
A0A0A0MSV9 [Direct mapping]
Tapasin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0002397 [MHC class I protein complex assembly]
GO:0002479 [antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent]
GO:0005515 [protein binding]
GO:0006952 [defense response]
GO:0019885 [antigen processing and presentation of endogenous peptide antigen via MHC class I]
GO:0042824 [MHC class I peptide loading complex]
Show all
504 aa
53.9 kDa
Yes 1
TAPBP-010
ENSP00000417523
ENST00000467025
C9JA35 [Direct mapping]
Tapasin
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016020 [membrane]
GO:0019885 [antigen processing and presentation of endogenous peptide antigen via MHC class I]
Show all
192 aa
20.3 kDa
Yes 0
TAPBP-206
ENSP00000387803
ENST00000456592
Q6P1N7 [Direct mapping]
TAPBP protein; Tapasin
Show all
   MEMSAT3 predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
156 aa
16.4 kDa
Yes 0

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