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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:40.5TPM
GTEx:2.7RPKM
FANTOM5:15.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA019527

  

Antibody HPA020912

  

Antibody CAB001809

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Medium   Low   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

40.5
overview Male, age 54 Sample 1
TPM: 39.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 35.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 40.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 86.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 33.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 16
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 57.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 34.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 35.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 52.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 47.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 29
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.0
Samples: 149

Max RPKM: 2.7
Min RPKM: 0.1
Std RPKM: 0.5
Median RPKM: 0.9
GTEX-13111-1926-SM-5GCOL 50-59 years, male 2.7
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 2.2
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 2.2
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 2.2
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 2.2
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 2.1
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 2.1
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 2.1
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 2.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 2.0
Show all
Colon - Transverse
RPKM: 4.0
Samples: 196

Max RPKM: 16.4
Min RPKM: 0.1
Std RPKM: 3.0
Median RPKM: 3.3
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 16.4
GTEX-11P7K-1526-SM-5EGI7 30-39 years, male 13.7
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 13.5
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 11.1
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 11.0
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 10.9
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 10.8
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 9.9
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 9.9
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 9.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

15.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 15.5
FF:10014-101C5 62,83,84 years, mixed 15.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.