We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
HBB
  • premium

    TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:287.9RPKM
FANTOM5:152.7Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA043234

 

Antibody CAB009526

 

Glial cells

Not detected   Not detected  

Neuronal cells

Not detected   Not detected  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

287.9

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 287.9
Samples: 117

Max RPKM: 2409.4
Min RPKM: 17.2
Std RPKM: 420.0
Median RPKM: 135.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2409.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2185.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1876.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1819.2
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 1226.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1221.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1196.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 927.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 886.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 810.2
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 801.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 769.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 710.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 581.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 577.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 494.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 469.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 468.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 448.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 445.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 444.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 441.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 441.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 336.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 333.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 320.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 315.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 304.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 289.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 248.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 245.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 237.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 227.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 217.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 211.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 210.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 207.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 206.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 206.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 201.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 194.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 193.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 189.9
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 188.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 187.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 183.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 181.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 181.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 179.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 179.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 175.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 173.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 170.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 169.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 168.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 154.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 143.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 138.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 135.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 134.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 133.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 130.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 129.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 128.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 127.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 122.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 117.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 111.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 111.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 108.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 106.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 105.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 103.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 101.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 100.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 98.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 96.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 94.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 93.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 92.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 92.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 87.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 85.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 80.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 79.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 77.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 77.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 75.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 75.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 74.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 74.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 72.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 72.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 67.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 64.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 64.2
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 63.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 62.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 61.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 53.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 51.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 48.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 42.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 37.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 36.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 34.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 33.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 29.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 28.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 27.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 24.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 22.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 20.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 19.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 17.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

152.7

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 54.0
FF:10164-103B2 76 years, female 54.0

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.