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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:12.5TPM
GTEx:7.9RPKM
FANTOM5:56.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA035174

  

Antibody CAB005167

  

Endothelial cells

 High   High  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

12.5
overview Male, age 54 Sample 1
TPM: 12.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 21.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 17.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 10.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 10.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.1
Samples: 149

Max RPKM: 16.0
Min RPKM: 4.0
Std RPKM: 1.9
Median RPKM: 7.8
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 16.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 14.4
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 14.1
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 12.3
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 11.4
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 11.3
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 11.3
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 11.3
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 11.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 11.1
Show all
Colon - Transverse
RPKM: 7.7
Samples: 196

Max RPKM: 14.1
Min RPKM: 1.7
Std RPKM: 1.9
Median RPKM: 7.4
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 14.1
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 13.4
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 13.3
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 13.3
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 13.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 12.6
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 12.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 11.7
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 11.3
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 11.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.8
FF:10014-101C5 62,83,84 years, mixed 56.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.