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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:10.4TPM
GTEx:13.7RPKM
FANTOM5:35.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA002041

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

10.4
overview Male, age 54 Sample 1
TPM: 12.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 11.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 9.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 12.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 16.1
Samples: 149

Max RPKM: 34.1
Min RPKM: 3.3
Std RPKM: 5.5
Median RPKM: 16.0
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 34.1
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 32.3
GTEX-13111-1926-SM-5GCOL 50-59 years, male 30.5
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 28.7
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 28.0
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 26.5
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 26.0
GTEX-12696-1926-SM-5EGJT 60-69 years, male 25.6
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 25.4
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 24.8
Show all
Colon - Transverse
RPKM: 11.9
Samples: 196

Max RPKM: 35.6
Min RPKM: 1.7
Std RPKM: 6.1
Median RPKM: 10.3
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 35.6
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 33.4
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 32.9
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 31.5
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 30.7
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 28.6
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 28.4
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 27.1
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 25.8
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 25.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

35.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 35.9
FF:10014-101C5 62,83,84 years, mixed 35.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.