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SYNJ2BP-COX16

GENERAL INFORMATION

Gene name

 SYNJ2BP-COX16

Gene description

 SYNJ2BP-COX16 readthrough

Protein class

 Predicted intracellular proteins

Predicted localization

 Intracellular

Number of transcripts

 4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Tissue enhanced (testis)
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

Protein expression

 Granular cytoplasmic expression, most abundant gastrointestinal tract.

DATA RELIABILITY

Data reliability
description

 Antibody staining mainly consistent with RNA expression data. Pending external verification. Caution, targets protein from more than one gene.

Reliability score

 Approved based on 2 antibodies.
HPA000866 , HPA062659
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (testis)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 SYNJ2BP-COX16

Synonyms

Description

 SYNJ2BP-COX16 readthrough (HGNC Symbol)

Entrez gene summary

 This locus represents naturally occurring read-through transcription between the neighboring SYNJ2BP (synaptojanin 2 binding protein) and COX16 (COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)) genes on chromosome 14. The read-through transcript produces a fusion protein that shares sequence identity with each individual gene product. Alternate splicing results in multiple transcript variants that encode different isoforms. [provided by RefSeq, Feb 2011]

Chromosome

 14

Cytoband

 q24.2

Chromosome location (bp)

 70326064 - 70417074

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000258644 (version 83.38)

Entrez gene

 100529257

UniProt

neXtProt

Antibodypedia

 SYNJ2BP-COX16 antibodies

PROTEIN BROWSER
SYNJ2BP-COX16-001
SYNJ2BP-COX16-002
SYNJ2BP-COX16-003
SYNJ2BP-COX16-005

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
SYNJ2BP-COX16-001
ENSP00000480746
ENST00000555276
A0A087WX56 [Direct mapping]
Protein SYNJ2BP-COX16
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Predicted intracellular proteins
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GO:0031966 [mitochondrial membrane]
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 54 aa
6.5 kDa 		No 0
SYNJ2BP-COX16-002
ENSP00000482133
ENST00000621525
A0A087WYV9 [Direct mapping]
Protein SYNJ2BP-COX16
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Predicted intracellular proteins
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GO:0005515 [protein binding]
GO:0031966 [mitochondrial membrane]
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 182 aa
20.5 kDa 		No 0
SYNJ2BP-COX16-003
ENSP00000478757
ENST00000617196
A0A087WUM0 [Direct mapping]
Protein SYNJ2BP-COX16
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Predicted intracellular proteins
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GO:0005515 [protein binding]
GO:0031966 [mitochondrial membrane]
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 186 aa
20.8 kDa 		No 0
SYNJ2BP-COX16-005
ENSP00000484161
ENST00000617124
A0A087X1F5 [Direct mapping]
Protein SYNJ2BP-COX16
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Predicted intracellular proteins
Show all
GO:0005515 [protein binding]
GO:0031966 [mitochondrial membrane]
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 153 aa
17.3 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.