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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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AARSD1
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    TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

AARSD1

Gene description

Alanyl-tRNA synthetase domain containing 1

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

2
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression at variable levels in several cell types. Most abundant in cells in seminiferus ducts.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. Pending external verification. Caution, targets protein from more than one gene. Presumed off target binding observed and disregarded.

Reliability score

Supported based on 3 antibodies.
HPA021408 , HPA022869 , HPA023714
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

AARSD1 (HGNC Symbol)

Synonyms

MGC2744

Description

Alanyl-tRNA synthetase domain containing 1 (HGNC Symbol)

Entrez gene summary

Chromosome

17

Cytoband

q21.31

Chromosome location (bp)

42950526 - 42964498

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000266967 (version 83.38)

Entrez gene

80755

UniProt

Q9BTE6 (UniProt - Evidence at protein level)

neXtProt

NX_Q9BTE6

Antibodypedia

AARSD1 antibodies

PROTEIN BROWSER

AARSD1-001
AARSD1-013

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

AARSD1-001
ENSP00000400870
ENST00000427569
Q9BTE6 [Direct mapping]
Alanyl-tRNA editing protein Aarsd1
Show all
Predicted intracellular proteins
Show all
GO:0000049 [tRNA binding]
GO:0000166 [nucleotide binding]
GO:0002161 [aminoacyl-tRNA editing activity]
GO:0002196 [Ser-tRNA(Ala) hydrolase activity]
GO:0003674 [molecular_function]
GO:0003676 [nucleic acid binding]
GO:0004813 [alanine-tRNA ligase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0006419 [alanyl-tRNA aminoacylation]
GO:0006450 [regulation of translational fidelity]
GO:0008150 [biological_process]
GO:0016876 [ligase activity, forming aminoacyl-tRNA and related compounds]
GO:0043039 [tRNA aminoacylation]
GO:0046872 [metal ion binding]
Show all
412 aa
45.5 kDa
No 0
AARSD1-013
ENSP00000400735
ENST00000430739
L7N2F4 [Direct mapping]
Alanyl-tRNA-editing protein Aarsd1
Show all
Predicted intracellular proteins
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0016876 [ligase activity, forming aminoacyl-tRNA and related compounds]
GO:0043039 [tRNA aminoacylation]
Show all
140 aa
15.5 kDa
No 0

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