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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

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Score

Score

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Antibodies

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NBPF12
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

NBPF12

Gene description

Neuroblastoma breakpoint family, member 12

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

8
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
FANTOM5:Mixed

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in most tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. Pending external verification. Caution, targets protein from more than one gene.

Reliability score

Approved based on 7 antibodies.
HPA038748 , HPA042595 , HPA043105 , HPA043692 , HPA044023 , HPA046971 , HPA058050
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed

GENE INFORMATION

Gene name

NBPF12 (HGNC Symbol)

Synonyms

COAS1, KIAA1245

Description

Neuroblastoma breakpoint family, member 12 (HGNC Symbol)

Entrez gene summary

This gene is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the human lineage and has expanded, to a lesser extent, among primates in general. Members of this gene family are characterized by tandemly repeated copies of DUF1220 protein domains. Gene copy number variations in the human chromosomal region 1q21.1, where most DUF1220 domains are located, have been implicated in a number of developmental and neurogenetic diseases such as microcephaly, macrocephaly, autism, schizophrenia, mental retardation, congenital heart disease, neuroblastoma, and congenital kidney and urinary tract anomalies. Altered expression of some gene family members is associated with several types of cancer. This gene family contains numerous pseudogenes. [provided by RefSeq, May 2013]

Chromosome

1

Cytoband

q21.1

Chromosome location (bp)

146938744 - 146996202

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000268043 (version 83.38)

Entrez gene

149013

UniProt

neXtProt

Antibodypedia

NBPF12 antibodies

PROTEIN BROWSER

NBPF12-001
NBPF12-201
NBPF12-202
NBPF12-203
NBPF12-204
NBPF12-205
NBPF12-206
NBPF12-207

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

NBPF12-001
ENSP00000478609
ENST00000617931
A0A087WUF1 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Show all
1457 aa
167.7 kDa
No 0
NBPF12-201
ENSP00000391949
ENST00000439206
H7BZX4 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
Predicted intracellular proteins
Show all
577 aa
66.8 kDa
No 0
NBPF12-202
ENSP00000464426
ENST00000579935
A0A075B764 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
Predicted intracellular proteins
Show all
1111 aa
128 kDa
No 0
NBPF12-203
ENSP00000481469
ENST00000611443
A0A087WY24 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
Predicted intracellular proteins
Show all
1213 aa
139.5 kDa
No 0
NBPF12-204
ENSP00000480046
ENST00000613714
A0A087WW93 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
Predicted intracellular proteins
Show all
867 aa
99.8 kDa
No 0
NBPF12-205
ENSP00000478967
ENST00000617614
A0A087WUW2 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
Predicted intracellular proteins
Show all
865 aa
99.5 kDa
No 0
NBPF12-206
ENSP00000484391
ENST00000617844
A0A087WUF1 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Show all
1457 aa
167.7 kDa
No 0
NBPF12-207
ENSP00000483451
ENST00000617864
A0A087X0J8 [Direct mapping]
Neuroblastoma breakpoint family member 12
Show all
Predicted intracellular proteins
Show all
299 aa
34 kDa
No 0

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