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RALA

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.2TPM
GTEx:11.1RPKM
FANTOM5:54.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA065232

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

30.2
overview Male, age 54 Sample 1
TPM: 35.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 26.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 25.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 40
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 24.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 36.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 26.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 29.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 41
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 37.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 33.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.2
Samples: 149

Max RPKM: 14.3
Min RPKM: 5.4
Std RPKM: 1.9
Median RPKM: 9.0
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 14.3
GTEX-145LS-2926-SM-5O99G 60-69 years, female 14.0
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 13.9
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 13.4
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 13.4
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 13.2
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 13.2
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 13.1
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 12.9
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 12.6
Show all
Colon - Transverse
RPKM: 12.5
Samples: 196

Max RPKM: 26.8
Min RPKM: 5.7
Std RPKM: 3.5
Median RPKM: 12.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 26.8
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 23.7
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 23.4
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 20.9
GTEX-139YR-2126-SM-5KM11 50-59 years, male 20.5
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 20.2
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 19.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 19.3
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 19.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 19.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

54.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 54.0
FF:10014-101C5 62,83,84 years, mixed 54.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.