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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.0TPM
GTEx:1.2RPKM
FANTOM5:8.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 
 
 

Antibody staining

Antibody HPA005680

  

Antibody HPA050556

  

Antibody CAB033902

  

Antibody CAB062547

  

Antibody CAB068175

  

Endothelial cells

 Not detected   Medium   Low   Not detected  

Glandular cells

 Medium   Low   Not detected   Medium   Medium  

Peripheral nerve/ganglion

 Low   Not detected   Medium   Medium  
            
            
         
         
         

COLON - HPA RNA-seq

Average TPM

6.0
overview Male, age 54 Sample 1
TPM: 7.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 9.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.8
Samples: 149

Max RPKM: 20.5
Min RPKM: 0.0
Std RPKM: 1.9
Median RPKM: 0.5
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 20.5
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 13.4
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 2.3
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 2.0
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 1.7
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 1.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 1.4
GTEX-XBED-1726-SM-47JYO 60-69 years, male 1.3
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 1.3
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 1.2
Show all
Colon - Transverse
RPKM: 1.5
Samples: 196

Max RPKM: 8.2
Min RPKM: 0.1
Std RPKM: 1.2
Median RPKM: 1.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 8.2
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 6.9
GTEX-Y114-1526-SM-4TT79 50-59 years, female 5.7
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 5.5
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 5.3
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 4.7
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 4.6
GTEX-1128S-1626-SM-5H12O 60-69 years, female 4.2
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 4.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 4.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

8.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 8.3
FF:10014-101C5 62,83,84 years, mixed 8.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.