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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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PATHOLOGY ATLAS MELANOMA

GENE/PROTEIN

Antibody validation

Dictionary

Melanoma

MELANOMA - Survival analysis

Best separation

Median separation

Expression cutoff

430.7 FPKM 684.1 FPKM

3-year survival high

40% 17%

3-year survival low

37% 46%

Log-rank P value

1.17e-1 4.33e-1

Interactive survival scatter plot (individual patient data)




Stage:



TCGA RNA samples

Average FPKM

840.2

Number of samples

102

Samples

Sample

Description

FPKM

TCGA-ER-A196-01A 64 years, female, white, stage:iic 2607.8
TCGA-IH-A3EA-01A 61 years, male, white, stage:iic 2351.0
TCGA-BF-A1Q0-01A 80 years, male, white, stage:iic 2174.6
TCGA-GF-A769-01A 39 years, male, white, stage:iic 2042.3
TCGA-GN-A26C-01A 77 years, male, white, stage:iiic 1874.5
TCGA-GN-A263-01A 24 years, male, white, stage:iv 1866.0
TCGA-EB-A85J-01A 66 years, female, white, stage:iib 1814.1
TCGA-BF-A1PV-01A 74 years, female, white, stage:iic 1808.1
TCGA-EB-A3XE-01A 77 years, female, white, stage:iia 1732.7
TCGA-EB-A41A-01A 90 years, male, white, stage:iic 1679.0
TCGA-EB-A82B-01A 58 years, female, asian, stage:iii 1646.5
TCGA-EB-A4P0-01A 82 years, male, white, stage:iic 1498.5
TCGA-YG-AA3N-01A 67 years, male, stage:iic 1493.0
TCGA-BF-AAOX-01A 83 years, male, white, stage:iic 1469.0
TCGA-EB-A5UM-01A 48 years, female, white, stage:iic 1424.3
TCGA-EB-A51B-01A 53 years, male, white, stage:iic 1345.4
TCGA-ER-A19K-01A 79 years, female, white, stage:iic 1340.2
TCGA-BF-AAOU-01A 73 years, female, white, stage:iic 1323.7
TCGA-BF-A1PZ-01A 71 years, female, white, stage:iib 1308.6
TCGA-XV-A9W5-01A 51 years, male, white, stage:i/ii nos 1300.3
TCGA-EB-A57M-01A 56 years, male, asian, stage:iiib 1251.8
TCGA-EB-A97M-01A 66 years, male, white, stage:iic 1251.6
TCGA-D9-A4Z5-01A 68 years, male, white, stage:iib 1236.0
TCGA-FR-A3R1-01A 69 years, male, white, stage:iic 1179.6
TCGA-EB-A3Y7-01A 86 years, female, white, stage:iiib 1155.6
TCGA-XV-AAZY-01A 76 years, female, white, stage:iiic 1100.7
TCGA-BF-A5ES-01A 76 years, female, white, stage:iic 1097.9
TCGA-ER-A194-01A 77 years, male, white 1078.1
TCGA-ER-A2NF-01A 53 years, male, white, stage:iiib 1038.2
TCGA-BF-AAP4-01A 61 years, male, white, stage:iic 1027.8
TCGA-EB-A82C-01A 70 years, female, asian, stage:iic 984.5
TCGA-BF-A5ER-01A 63 years, male, white, stage:iic 980.2
TCGA-WE-A8K4-01A 85 years, male, white, stage:iib 970.2
TCGA-EB-A4IS-01A 77 years, male, white, stage:iib 943.8
TCGA-FR-A2OS-01A 49 years, female, white, stage:iic 938.8
TCGA-FR-A726-01A 90 years, male, white, stage:iic 925.5
TCGA-EB-A41B-01A 76 years, female, white, stage:iic 887.9
TCGA-EB-A1NK-01A 48 years, male, white, stage:iic 851.6
TCGA-BF-A1PU-01A 46 years, female, white, stage:iic 850.1
TCGA-EB-A553-01A 62 years, male, white, stage:iic 844.2
TCGA-XV-AAZW-01A 62 years, female, white, stage:ii 829.0
TCGA-BF-A5EQ-01A 63 years, male, white, stage:iic 817.4
TCGA-EB-A4XL-01A 56 years, female, white, stage:iic 812.8
TCGA-EB-A42Z-01A 49 years, male, asian, stage:iiic 811.1
TCGA-BF-AAP2-01A 62 years, male, white, stage:iib 804.1
TCGA-EB-A42Y-01A 73 years, female, asian, stage:iic 768.7
TCGA-EB-A85I-01A 66 years, male, white, stage:iic 748.9
TCGA-BF-A3DN-01A 81 years, female, white, stage:iiic 742.2
TCGA-BF-AAP7-01A 76 years, female, white, stage:iic 704.3
TCGA-EB-A24C-01A 56 years, male, white 690.3
TCGA-EB-A3XF-01A 57 years, male, white, stage:iic 685.3
TCGA-D9-A4Z3-01A 73 years, female, white, stage:iiic 683.0
TCGA-ER-A19T-01A 51 years, male, white, stage:iv 665.4
TCGA-FS-A1ZN-01A 43 years, male, white, stage:iiia 636.1
TCGA-BF-A5EP-01A 75 years, female, white, stage:iiic 622.6
TCGA-EB-A551-01A 78 years, female, white, stage:iiic 615.0
TCGA-EB-A6QZ-01A 76 years, female, white, stage:iia 613.4
TCGA-BF-A5EO-01A 65 years, male, white, stage:iic 605.7
TCGA-EB-A5VU-01A 56 years, male, asian, stage:iiib 598.4
TCGA-XV-AAZV-01A 56 years, female, white, stage:ii 567.1
TCGA-GN-A8LN-01A 68 years, male, white, stage:iic 563.8
TCGA-EB-A4OY-01A 65 years, female, white, stage:iiib 558.4
TCGA-D9-A3Z4-01A 54 years, male, white, stage:iiic 555.9
TCGA-EB-A431-01A 34 years, male, white, stage:iic 542.1
TCGA-EB-A44P-01A 58 years, female, white, stage:iic 537.4
TCGA-EB-A4IQ-01A 42 years, female, asian, stage:iiib 535.9
TCGA-BF-A3DM-01A 63 years, male, white, stage:iia 534.4
TCGA-EB-A3HV-01A 37 years, male, white, stage:iic 520.1
TCGA-FR-A728-01A 54 years, female, white, stage:iiib 518.9
TCGA-BF-A3DL-01A 84 years, female, white, stage:iiib 518.1
TCGA-BF-A3DJ-01A 36 years, female, white, stage:iiib 514.7
TCGA-EB-A44O-01A 69 years, male, white, stage:iib 513.3
TCGA-EB-A3Y6-01A 56 years, female, white, stage:iic 510.8
TCGA-XV-A9W2-01A 81 years, male, white, stage:i 498.6
TCGA-EB-A24D-01A 72 years, male, white, stage:iiib 481.6
TCGA-GN-A4U5-01A 61 years, female, white, stage:ib 440.7
TCGA-EB-A299-01A 63 years, male, white, stage:iia 435.1
TCGA-EB-A5SE-01A 73 years, male, white, stage:iib 426.2
TCGA-GF-A2C7-01A 48 years, male, white, stage:iic 418.3
TCGA-EB-A4OZ-01A 42 years, female, white, stage:iiic 401.2
TCGA-BF-A9VF-01A 77 years, male, white, stage:iic 392.2
TCGA-EB-A3XB-01A 63 years, male, white, stage:ii 383.1
TCGA-EB-A6R0-01A 58 years, female, white, stage:iic 380.6
TCGA-HR-A5NC-01A 90 years, female 380.4
TCGA-BF-A1PX-01A 56 years, male, white, stage:iiib 369.6
TCGA-ER-A42H-01A 77 years, male, white 365.6
TCGA-EB-A44N-01A 59 years, male, white, stage:iic 358.8
TCGA-FW-A5DX-01A 71 years, male, white, stage:iiic 358.5
TCGA-EB-A5FP-01A 65 years, female, white, stage:iv 354.8
TCGA-EB-A3XC-01A 74 years, male, white, stage:iic 346.5
TCGA-D3-A5GT-01A 43 years, male, white, stage:iiic 345.1
TCGA-EB-A3XD-01A 53 years, female, white, stage:iic 341.3
TCGA-DA-A960-01A 73 years, male, white, stage:iib 339.8
TCGA-BF-AAP6-01A 55 years, male, white, stage:iii 337.7
TCGA-BF-AAP8-01A 58 years, male, white, stage:iic 311.4
TCGA-D9-A4Z2-01A 50 years, male, white, stage:iiic 295.2
TCGA-ER-A2NB-01A 57 years, male, white, stage:iiib 285.3
TCGA-EB-A550-01A 75 years, female, white, stage:iic 251.8
TCGA-BF-AAP1-01A 86 years, male, white, stage:iic 246.7
TCGA-EB-A6QY-01A 71 years, male, white, stage:iic 193.7
TCGA-EB-A5SF-01A 78 years, female, white, stage:iic 177.6
TCGA-XV-A9VZ-01A 90 years, female, white, stage:ii 151.0
Show all

MELANOMA - Protein expression

 

Antibody HPA001762

Antibody CAB000080

Antibody CAB058687

 Antibody staining
  High
  Medium
  Low
  Not detected
    
 Intensity
  Strong
  Moderate
  Weak
  Negative
    
 Quantity
  >75%
  75%-25%
  <25%
  Rare
  Negative
    
 Location
  Cytoplasmic/membranous,nuclear
  Cytoplasmic/membranous
  Nuclear
  None
    

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