Tissue expression of VIM - Staining in breast

BREAST - Expression summary

Protein expression

RNA expression

HPA:	1156.3	TPM
GTEx:	722.3	RPKM
FANTOM5:	3008.4	Tags Per Million

BREAST - Annotated protein expression

Annotated protein
expression

Glandular cells:	Not detected
Myoepithelial cells:	Medium
Adipocytes:	High

Antibody staining	Antibody HPA001762	Antibody CAB000080	Antibody CAB058687
Glandular cells	Low	Not detected	Not detected
Myoepithelial cells	Low	High	Medium
Adipocytes	High	High

BREAST - HPA RNA-seq

Average TPM	1156.3

Female, age 52

Sample 1
TPM: 1245.5

Cell types%

Glandular cells: 15
Adipocytes: 5
Other cell types: 80

Female, age 80

Sample 2
TPM: 2343.1

Cell types%

Glandular cells: 5
Adipocytes: 15
Other cell types: 80

Female, age 47

Sample 3
TPM: 373.3

Cell types%

Glandular cells: 5
Adipocytes: 5
Other cell types: 90

Female, age 38

Sample 4
TPM: 663.2

Cell types%

Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seq

Average RPKM	722.3

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 722.3

Samples: 214

Max RPKM: 1663.9
Min RPKM: 69.0
Std RPKM: 281.6
Median RPKM: 679.6

GTEX-Y8E4-1626-SM-5S2MW

40-49 years, male

1663.9

GTEX-12KS4-0126-SM-5Q5A5

30-39 years, male

1525.7

GTEX-ZAB4-2526-SM-5HL8M

40-49 years, male

1515.6

GTEX-11EQ9-1826-SM-5Q5AJ

30-39 years, male

1482.7

GTEX-PSDG-1626-SM-48TCQ

50-59 years, male

1447.9

GTEX-ZA64-1526-SM-5CVMD

20-29 years, male

1378.2

GTEX-11ZUS-0826-SM-5FQUY

30-39 years, male

1341.1

GTEX-ZQUD-1926-SM-51MSA

30-39 years, male

1300.0

GTEX-12WSK-2226-SM-5GCO5

40-49 years, female

1283.6

GTEX-XQ8I-2426-SM-4WAXY

50-59 years, male

1264.5

Show all

BREAST - FANTOM5 CAGE

Average Tags Per Million	3008.4

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 3008.4

FF:10080-102A8

77 years, female

3008.4