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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:424.9TPM
GTEx:225.6RPKM
FANTOM5:820.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Not detected
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA001762

  

Antibody CAB000080

  

Antibody CAB058687

  

Endothelial cells

 High   High   High  

Glandular cells

 Not detected   Not detected   Not detected  

Peripheral nerve/ganglion

 Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

424.9
overview Male, age 54 Sample 1
TPM: 269
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 253.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 172.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 525.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 394.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 683.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 463.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 285.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 630.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 303.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 407
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 536.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 600.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

225.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 268.5
Samples: 149

Max RPKM: 685.2
Min RPKM: 71.3
Std RPKM: 126.8
Median RPKM: 238.3
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 685.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 649.7
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 590.2
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 572.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 564.3
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 543.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 541.9
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 540.6
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 536.8
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 536.5
Show all
Colon - Transverse
RPKM: 192.9
Samples: 196

Max RPKM: 1323.3
Min RPKM: 31.2
Std RPKM: 178.7
Median RPKM: 131.1
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 1323.3
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 975.0
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 964.5
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 712.2
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 691.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 634.6
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 631.3
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 608.8
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 572.3
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 566.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

820.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 820.2
FF:10014-101C5 62,83,84 years, mixed 820.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.