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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:84.1TPM
GTEx:106.8RPKM
FANTOM5:200.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA002131

  

Antibody CAB002453

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

84.1
overview Male, age 54 Sample 1
TPM: 59.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 38
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 29
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 54.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 36
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 269.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 59.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 57.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 164.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 50.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 92
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 103
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 80.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

106.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 141.2
Samples: 149

Max RPKM: 275.8
Min RPKM: 61.8
Std RPKM: 42.5
Median RPKM: 137.9
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 275.8
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 269.0
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 245.8
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 242.5
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 240.9
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 236.4
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 235.4
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 223.2
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 212.9
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 211.5
Show all
Colon - Transverse
RPKM: 80.6
Samples: 196

Max RPKM: 236.7
Min RPKM: 20.6
Std RPKM: 55.2
Median RPKM: 62.8
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 236.7
GTEX-SNMC-1126-SM-4DM5M 20-29 years, male 232.3
GTEX-XGQ4-1226-SM-4AT67 50-59 years, male 216.0
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 211.8
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 205.0
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 204.3
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 203.0
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 199.5
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 195.0
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 191.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

200.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 200.9
FF:10014-101C5 62,83,84 years, mixed 200.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.