Tissue expression of CDH1 - Staining in adipose tissue - The Human Protein Atlas

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CDH1

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TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA ADIPOSE TISSUE

GENE/PROTEIN

Antibody validation

Dictionary
	Soft tissue


Tissue proteome
	Adipose

SOFT TISSUE - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	1.0	TPM
GTEx:	0.3	RPKM
FANTOM5:	1.2	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Chondrocytes:	Not available
Fibroblasts:	Not detected
Peripheral nerve:	Not available
Adipocytes:	Not detected

Antibody staining	Antibody HPA004812		Antibody CAB000087		Antibody CAB028364		Antibody CAB072855		Antibody CAB072856		Antibody CAB072857
Chondrocytes	Not detected		Not detected		Not detected		Not detected		Not detected
Fibroblasts	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Peripheral nerve	Not detected
Adipocytes	Not detected

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Not detected
Fibroblasts:	Not detected
Peripheral nerve:	Not detected
Chondrocytes:	Not detected

Antibody staining	Antibody HPA004812		Antibody CAB000087		Antibody CAB028364		Antibody CAB072855		Antibody CAB072856		Antibody CAB072857
Adipocytes	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Fibroblasts	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected		Low		Not detected		Not detected		Not detected
Chondrocytes	Not detected

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	1.0

N/A

Female, age 80

Sample 1
TPM: 1.2

Cell types%

Adipocytes: 95
Other cell types: 5

N/A

Female, age 45

Sample 2
TPM: 0.7

N/A

Female, age 57

Sample 3
TPM: 2.3

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 74

Sample 4
TPM: 0.2

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 59

Sample 5
TPM: 0.6

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	0.3

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 0.2

Samples: 350

Max RPKM: 5.3
Min RPKM: 0.0
Std RPKM: 0.7
Median RPKM: 0.0

GTEX-OHPM-0226-SM-3LK61

50-59 years, male

5.3

GTEX-OXRL-0226-SM-3NB18

50-59 years, male

5.3

GTEX-ZDXO-2426-SM-5S2NJ

60-69 years, male

4.8

GTEX-11XUK-2126-SM-5EQLR

40-49 years, female

4.7

GTEX-SNOS-1426-SM-32PLY

40-49 years, male

4.4

GTEX-ZTSS-2026-SM-5987K

40-49 years, male

4.1

GTEX-Z9EW-1826-SM-5CVMA

40-49 years, male

3.8

GTEX-WH7G-2226-SM-3NMBN

40-49 years, male

3.7

GTEX-XV7Q-2626-SM-4BRVA

40-49 years, female

3.2

GTEX-13PVR-2426-SM-5RQHN

60-69 years, female

2.7

Show all

Adipose - Visceral (Omentum)
RPKM: 0.6

Samples: 227

Max RPKM: 5.0
Min RPKM: 0.0
Std RPKM: 0.8
Median RPKM: 0.2

GTEX-XOT4-0826-SM-4B66Y

60-69 years, female

5.0

GTEX-13O3P-0926-SM-5IFFI

50-59 years, male

4.5

GTEX-XBEC-1826-SM-4QASN

50-59 years, male

4.5

GTEX-11DYG-2026-SM-5EGGX

60-69 years, male

3.5

GTEX-XLM4-1026-SM-4AT51

60-69 years, male

3.5

GTEX-13U4I-1726-SM-5J1MF

40-49 years, female

3.4

GTEX-13N1W-1226-SM-5K7UM

70-79 years, male

3.3

GTEX-11NV4-1426-SM-5BC4W

60-69 years, male

3.2

GTEX-139TU-1426-SM-5LZY9

60-69 years, male

3.2

GTEX-14DAQ-2526-SM-5RQIO

60-69 years, female

2.7

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	1.2

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 1.2

65,65,76 years, mixed

1.2

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.