Tissue expression of CDH1 - Staining in cerebral cortex - The Human Protein Atlas

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CDH1

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TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation

Dictionary
	Cerebral cortex


Tissue proteome
	Brain
	Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	2.5	TPM
GTEx:	0.4	RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:	Not detected
Glial cells:	Not detected
Neuronal cells:	Not detected
Neuropil:	Not detected

Antibody staining	Antibody HPA004812		Antibody CAB000087		Antibody CAB028364		Antibody CAB072855		Antibody CAB072856		Antibody CAB072857
Endothelial cells	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Glial cells	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Neuronal cells	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected
Neuropil	Not detected		Not detected		Not detected		Not detected		Not detected		Not detected

CEREBRAL CORTEX - HPA RNA-seq

Average TPM	2.5

N/A

Male, age 5

Sample 1
TPM: 2.6

overview

Female, age 40

Sample 2
TPM: 2.7

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

overview

Male, age 70

Sample 3
TPM: 2.2

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM	0.4

GTEx sample id

Sample description

RPKM

Brain - Cortex
RPKM: 0.5

Samples: 114

Max RPKM: 2.4
Min RPKM: 0.1
Std RPKM: 0.4
Median RPKM: 0.4

GTEX-12ZZY-3026-SM-5GCOU

60-69 years, male

2.4

GTEX-13G51-3026-SM-5IJB8

60-69 years, male

2.4

GTEX-13PVQ-3026-SM-5SI93

50-59 years, male

2.3

GTEX-11GS4-3126-SM-5A5LH

60-69 years, male

1.7

GTEX-13JVG-3126-SM-5L3FH

60-69 years, male

1.6

GTEX-UTHO-3026-SM-3GAFB

60-69 years, male

1.4

GTEX-WZTO-2926-SM-3NM9I

40-49 years, male

1.3

GTEX-12WSA-2926-SM-5EQ4D

60-69 years, male

1.2

GTEX-11DXY-3226-SM-5GIDE

60-69 years, male

1.1

GTEX-NPJ8-1526-SM-2D7VU

40-49 years, male

1.1

Show all

Brain - Frontal Cortex (BA9)
RPKM: 0.2

Samples: 108

Max RPKM: 1.0
Min RPKM: 0.0
Std RPKM: 0.2
Median RPKM: 0.2

GTEX-S7SE-0011-R10A-SM-2XCDF

50-59 years, male

1.0

GTEX-ZDXO-0011-R10a-SM-4WWD8

60-69 years, male

1.0

GTEX-ZE7O-0011-R10a-SM-57WAZ

50-59 years, female

1.0

GTEX-XMD1-0011-R10A-SM-4AT4A

60-69 years, male

0.8

GTEX-12WSA-0011-R10b-SM-5P9ET

60-69 years, male

0.7

GTEX-13OVL-0011-R10a-SM-5L3GS

50-59 years, male

0.7

GTEX-13FLW-0011-R10b-SM-5LZZF

50-59 years, male

0.6

GTEX-RVPU-0011-R10A-SM-2XCAH

50-59 years, male

0.6

GTEX-WVLH-0011-R10A-SM-3MJFM

50-59 years, male

0.6

GTEX-11GSP-0011-R10a-SM-5NQ7J

60-69 years, female

0.5

Show all

CEREBRAL CORTEX - FANTOM5 CAGE
No Fantom CAGE analysis found for this gene / tissue

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.