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CDH1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:128.6TPM
GTEx:30.0RPKM
FANTOM5:421.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA004812

  

Antibody CAB000087

  

Antibody CAB028364

  

Antibody CAB072855

  

Antibody CAB072856

  

Antibody CAB072857

  

Endothelial cells

 Not detected   Not detected   Not detected   Not detected   Not detected   Not detected  

Glandular cells

 High   High   High   High   High   High  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
              
           
           
           

COLON - HPA RNA-seq

Average TPM

128.6
overview Male, age 54 Sample 1
TPM: 151.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 119.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 111
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 203
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 46.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 73.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 150.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 152.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 92.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 148.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 189.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 132.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 100.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

30.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.9
Samples: 149

Max RPKM: 16.7
Min RPKM: 0.0
Std RPKM: 2.1
Median RPKM: 0.2
GTEX-XBED-1726-SM-47JYO 60-69 years, male 16.7
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 11.8
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 9.7
GTEX-V955-1726-SM-4JBHF 60-69 years, male 8.4
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 7.2
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 6.0
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 5.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 4.2
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 3.9
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 3.7
Show all
Colon - Transverse
RPKM: 52.2
Samples: 196

Max RPKM: 151.3
Min RPKM: 0.0
Std RPKM: 42.7
Median RPKM: 56.5
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 151.3
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 150.0
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 139.8
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 135.2
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 135.1
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 132.1
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 130.8
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 127.7
GTEX-11P7K-1526-SM-5EGI7 30-39 years, male 124.9
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 122.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

421.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 421.4
FF:10014-101C5 62,83,84 years, mixed 421.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.