Fields »
ABOUT
HELP
BLOG
CASP8

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.0TPM
GTEx:2.8RPKM
FANTOM5:48.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA001302

  

Antibody HPA005688

  

Antibody CAB002047

  

Endothelial cells

 Low   High   Low  

Glandular cells

 High   High   Low  

Peripheral nerve/ganglion

 Low  
        
     
     

COLON - HPA RNA-seq

Average TPM

16.0
overview Male, age 54 Sample 1
TPM: 14.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 16.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 18.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 17.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 12.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.4
Samples: 149

Max RPKM: 5.1
Min RPKM: 0.5
Std RPKM: 0.5
Median RPKM: 1.3
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 5.1
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 3.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 2.7
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 2.6
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 2.3
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 2.3
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 2.2
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 2.2
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 2.1
Show all
Colon - Transverse
RPKM: 3.8
Samples: 196

Max RPKM: 8.6
Min RPKM: 0.8
Std RPKM: 1.8
Median RPKM: 3.8
GTEX-1399U-1926-SM-5IFH7 50-59 years, female 8.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 8.2
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 8.1
GTEX-Y9LG-1526-SM-4WWDR 30-39 years, male 7.8
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 7.7
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 7.5
GTEX-144GM-1226-SM-5LU52 20-29 years, male 7.4
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 7.3
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 7.1
GTEX-139T6-1326-SM-5IFFO 50-59 years, male 7.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

48.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 48.0
FF:10014-101C5 62,83,84 years, mixed 48.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.