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Cancer

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SMARCD1
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    TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

SMARCD1

Gene description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

Protein class

Cancer-related genes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

6
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Ubiquitous nuclear expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. Presumed off target binding observed and disregarded.

Reliability score

Supported based on 1 antibody.
HPA004101
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

SMARCD1 (HGNC Symbol)

Synonyms

BAF60A, CRACD1, Rsc6p

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and has sequence similarity to the yeast Swp73 protein. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Chromosome

12

Cytoband

q13.12

Chromosome location (bp)

50084972 - 50100712

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000066117 (version 83.38)

Entrez gene

6602

UniProt

Q96GM5 (UniProt - Evidence at protein level)

neXtProt

NX_Q96GM5

Antibodypedia

SMARCD1 antibodies

PROTEIN BROWSER

SMARCD1-001
SMARCD1-002
SMARCD1-004
SMARCD1-010
SMARCD1-011
SMARCD1-012

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SMARCD1-001
ENSP00000378414
ENST00000394963
Q96GM5 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003682 [chromatin binding]
GO:0003713 [transcription coactivator activity]
GO:0005102 [receptor binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0006337 [nucleosome disassembly]
GO:0006338 [chromatin remodeling]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0007399 [nervous system development]
GO:0016514 [SWI/SNF complex]
GO:0032947 [protein complex scaffold]
GO:0048096 [chromatin-mediated maintenance of transcription]
GO:0071398 [cellular response to fatty acid]
GO:0071564 [npBAF complex]
GO:0071565 [nBAF complex]
GO:0090544 [BAF-type complex]
Show all
515 aa
58.2 kDa
No 0
SMARCD1-002
ENSP00000370924
ENST00000381513
Q96GM5 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003713 [transcription coactivator activity]
GO:0005515 [protein binding]
GO:0006337 [nucleosome disassembly]
GO:0006338 [chromatin remodeling]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0007399 [nervous system development]
GO:0016514 [SWI/SNF complex]
GO:0032947 [protein complex scaffold]
GO:0048096 [chromatin-mediated maintenance of transcription]
GO:0071564 [npBAF complex]
GO:0071565 [nBAF complex]
Show all
474 aa
53.3 kDa
No 0
SMARCD1-004
ENSP00000449825
ENST00000551497
F8VW95 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
113 aa
12.8 kDa
No 0
SMARCD1-010
ENSP00000448030
ENST00000550477
F8VUB0 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
290 aa
32.1 kDa
No 0
SMARCD1-011
ENSP00000447386
ENST00000551966
F8VZ70 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
278 aa
30.3 kDa
No 0
SMARCD1-012
ENSP00000448627
ENST00000548573
F8VRQ4 [Direct mapping]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
313 aa
36.8 kDa
No 0

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