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ARFGEF1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:20.0TPM
GTEx:8.2RPKM
FANTOM5:71.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA023399

  

Antibody HPA023822

  

Endothelial cells

 Medium   Low  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

20.0
overview Male, age 54 Sample 1
TPM: 27.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 27
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 20.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 19.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 20.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 23.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 19.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.0
Samples: 149

Max RPKM: 9.7
Min RPKM: 4.1
Std RPKM: 0.9
Median RPKM: 7.0
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 9.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 9.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 9.4
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 9.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 9.1
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 9.0
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 8.9
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 8.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 8.5
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 8.5
Show all
Colon - Transverse
RPKM: 9.2
Samples: 196

Max RPKM: 15.1
Min RPKM: 4.4
Std RPKM: 1.8
Median RPKM: 9.1
GTEX-144GM-1226-SM-5LU52 20-29 years, male 15.1
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 14.7
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 13.1
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 13.0
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 12.9
GTEX-P4PP-1426-SM-3NM9L 30-39 years, female 12.5
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 12.3
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 12.3
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 12.1
GTEX-139YR-2126-SM-5KM11 50-59 years, male 12.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

71.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 71.3
FF:10014-101C5 62,83,84 years, mixed 71.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.