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SCARB1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.4TPM
GTEx:5.6RPKM
FANTOM5:396.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA066285

  

Antibody CAB070124

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

16.4
overview Male, age 54 Sample 1
TPM: 17
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 16.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 18.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 31.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.8
Samples: 149

Max RPKM: 15.2
Min RPKM: 1.3
Std RPKM: 2.0
Median RPKM: 3.3
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 15.2
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 14.5
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 11.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 8.4
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 8.1
GTEX-145LS-2926-SM-5O99G 60-69 years, female 7.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 7.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 7.1
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 6.8
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 6.5
Show all
Colon - Transverse
RPKM: 7.0
Samples: 196

Max RPKM: 31.6
Min RPKM: 1.9
Std RPKM: 3.4
Median RPKM: 6.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 31.6
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 17.1
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 15.6
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 15.1
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 14.6
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 13.7
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 13.2
GTEX-R55G-1226-SM-48FDC 40-49 years, female 13.1
GTEX-11DXX-1826-SM-5H126 60-69 years, female 12.8
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 12.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

396.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 396.4
FF:10014-101C5 62,83,84 years, mixed 396.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.